Descripción: We present CDW-EIS theoretical calculations for the projectile deflection in single ionization of Helium by heavy-ion impact as a function of ionized electron energies. These calculations account for the projectile-residual target ion interaction through a first order static potential and a second order polarization potential. The results are compared with recent experimental data by impact of 3.6 MeV/amu Au53+. A good agreement is found. © 2007 IOP Publishing Ltd.

Descripción: A comparison of the compressibility factors of argon and xenon reduced in terms of the Kihara intermolecular core model potential is presented. It is found that corresponding-states behavior is better obeyed by using the Kihara rather than the Lennard-Jones potential. The results of this paper indicate that the assumption of the pairwise additivity of the potential seems to be valid within the range covered by the presently available experimental data.

Descripción: The effect of O2+, H2+ O 2+, and N2+ O2 + ion-beam irradiation of carbon nanotubes (CNTs) films on the chemical and electronic properties of the material is reported. The CNTs were grown by the chemical vapor deposition technique (CVD) on silicon TiN coated substrates previously decorated with Ni particles. The Ni decoration and TiN coating were successively deposited by ion-beam assisted deposition (IBAD) and afterwards the nanotubes were grown. The whole deposition procedure was performed in situ as well as the study of the effect of ion-beam irradiation on the CNTs by x-ray photoelectron spectroscopy (XPS). Raman scattering, field-effect emission gun scanning electron microscopy (FEG-SEM), and field emission (FE) measurements were performed ex situ. The experimental data show that: (a) the presence of either H2+ or N2 + ions in the irradiation beam determines the oxygen concentration remaining in the samples as well as the studied structural characteristics; (b) due to the experimental conditions used in the study, no morphological changes have been observed after irradiation of the CNTs; (c) the FE experiments indicate that the electron emission from the CNTs follows the Fowler-Nordheim model, and it is dependent on the oxygen concentration remaining in the samples; and (d) in association with FE results, the XPS data suggest that the formation of terminal quinone groups decreases the CNTs work function of the material. © 2011 American Institute of Physics.

Descripción: An experimental validation of an model for the production of birdsongs was discussed. The derivation of the model with functions whose time dependence came from recordings of muscle activities and air sac pressure was studied. It was found that birds' songs were recorded and compared with the synthetic songs. Some predictions of the model concerning the relative levels of activity in the gating muscles at the beginning and end of a syllable were also tested.

Descripción: Matter-wave interferometry has been largely studied in the last few years. Usually, the main problem in the analysis of the diffraction experiments is to establish the causes for the loss of coherence observed in the interference pattern. In this work, we use different type of environmental couplings to model a two slit diffraction experiment with massive particles. For each model, we study the effects of decoherence on the interference pattern and define a visibility function that measures the loss of contrast of the interference fringes on a distant screen. Finally, we apply our results to the experimental reported data on massive particles C70. © 2007 IOP Publishing Ltd.

Descripción: In the frame of finite range density functional (FRDF) theory, we review the systematics of energetic features of 4HeN clusters doped with atomic or molecular impurities, as well as the instability scenario of their collective motions. It is shown that for drops up to N = 500, the predictions of FRDF theory are coincident with those arising from microscopic many-body calculations that employ variational or diffusion Monte Carlo methods. For larger drops, the present description predicts a smooth approach to zero of the collective energies, a scenario that appears to support the most recent experimental data and microscopic calculations that demonstrate that the impurity is located within the bulk of the drop. © 1997 American Institute of Physics.

Descripción: Prosopis represents a valuable forest resource in arid and semiarid regions. Management of promising species requires information about genetic parameters, mainly the heritability (h2) of quantitative profitable traits. This parameter is traditionally estimated from progeny tests or half-sib analysis conducted in experimental stands. Such an approach estimates h 2 from the ratio of between-family/total phenotypic variance. These analyses are difficult to apply to natural populations of species with a long life cycle, overlapping generations, and a mixed mating system, without genealogical information. A promising alternative is the use of molecular marker information to infer relatedness between individuals and to estimate h 2 from the regression of phenotypic similarity on inferred relatedness. In the current study we compared h2 of 13 quantitative traits estimated by these two methods in an experimental stand of P. alba, where genealogical information was available. We inferred pairwise relatedness by Ritland's method using six microsatellite loci. Relatedness and heritability estimates from molecular information were highly correlated to the values obtained from genealogical data. Although Ritland's method yields lower h 2 estimates and tends to overestimate genetic correlations between traits, this approach is useful to predict the expected relative gain of different quantitative traits under selection without genealogical information.

Descripción: A projectile ion-recoil ion and electron-recoil ion coincidence technique has been used to study the multiple ionization process in collisions of 0.75-4.0MeV B2+ with Ne atoms. Absolute total and partial pure ionization cross sections are reported for the first time at these impact energies with the present setup. The relative contribution of each recoil charge state has been investigated. The experimental data are compared to CDW-EIS calculation and with He2+ projectiles. The data throw further light on the effect of projectile screening in the ionization of multi-electronic targets and provide a support for the validity of the CDW-EIS model in this intermediate-to low velocity regime.

Descripción: We present a theoretical study on the inner-shell ionization of Au, Pb, and Bi. A collective response model, the shellwise local plasma approximation (SLPA), is employed, which works within the dielectric formalism. The wave functions and binding energies were obtained in fully-relativistic way by solving numerically the Dirac equation. The theoretical results describe nicely the experimental data for M-shell ionization of Au and Bi above 2MeV/amu, and for L-shell ionization of Au and Pb above 10 MeV/amu. The SLPA tends to underestimate the data for energies below the range of validity of the model and approach to them for higher energies.

Descripción: Xanthan is an industrially important exopolysaccharide produced by the phytopathogenic, gram-negative bacterium Xanthomonas campestris pv. campestris. It is composed of polymerized pentasaccharide repeating malts which are assembled by the sequential addition of glucose-1-phosphate, glucose, mannose, glucuronic acid, and mannose on a polyprenol phosphate carrier (L. Ielpi, R. O. Couso, and M. A. Dankert, J. Bacteriol. 175:2490- 2500, 1993). A cluster of 12 genes in a region designated xpsI or gum has been suggested to encode proteins involved in the synthesis and polymerization of the lipid intermediate. However, no experimental evidence supporting this suggestion has been published. In this work, from the biochemical analysis of a defined set of X. campestris gum mutants, we report experimental data for assigning functions to the products of the gum genes. We also show that the first step in the assembly of the lipid-linked intermediate is severely affected by the combination of certain gum and non- gum mutations. In addition, we provide evidence that the C-terminal domain of the gumD gene product is sufficient for its glucosyl-1-phosphate transferase activity. Finally, we found that alterations in the later stages of xanthan biosynthesis reduce the aggressiveness of X. campestris against the plant.

Descripción: A two-dimensional stochastic model for the dynamics of microtubules in gliding-assay experiments is presented here, which includes the viscous drag acting on the moving fiber and the interaction with the kinesins. For this purpose, we model kinesin as a spring, and explicitly use parameter values to characterize the model from experimental data. We numerically compute the mean attachment lifetimes of all motors, the total force exerted on the microtubules at all times, the effects of a distribution in the motor speeds, and also the mean velocity of a microtubule in a gliding assay. We find quantitative agreement with the results of J. Howard, A. J. Hudspeth, and R. D. Vale, Nature. 342:154-158. We perform additional numerical analysis of the individual motors, and show how cancellation of the forces exerted by the many motors creates a resultant longitudinal force much smaller than the maximum force that could be exerted by a single motor. We also examine the effects of inhomogeneities in the motor-speeds. Finally, we present a simple theoretical model for microtubules dynamics in gliding assays. We show that the model can be analytically solved in the limit of few motors attached to the microtubule and in the opposite limit of high motor density. We find that the speed of the microtubule goes like the mean speed of the motors in good quantitative agreement with the experimental and numerical results.

Descripción: Pineal hormone melatonin (N-acetyl-5-methoxytryptamine) is thought to modulate the calcium/calmodulin signaling pathway either by changing intracellular Ca2+ concentration via activation of its G-protein-coupled membrane receptors, or through a direct interaction with calmodulin (CaM). The present work studies the direct interaction of melatonin with intact calcium-saturated CaM both experimentally, by fluorescence and nuclear magnetic resonance spectroscopies, and theoretically, by molecular dynamics simulations. The analysis of the experimental data shows that the interaction is calcium-dependent. The affinity, as obtained from monitoring 15N and 1H chemical shift changes for a melatonin titration, is weak (in the millimolar range) and comparable for the N- and C-terminal domains. Partial replacement of diamagnetic Ca2+ by paramagnetic Tb3+ allowed the measurement of interdomain NMR pseudocontact shifts and residual dipolar couplings, indicating that each domain movement in the complex is not correlated with the other one. Molecular dynamics simulations allow us to follow the dynamics of melatonin in the binding pocket of CaM. Overall, this study provides an example of how a combination of experimental and theoretical approaches can shed light on a weakly interacting system of biological and pharmacological significance.

Descripción: Aims.We calculate the bounds on the variation in the fine structure constant at the time of primordial nucleosynthesis and at the time of neutral hydrogen formation. We used these bounds and other bounds from the late universe to test the Bekenstein model.Methods.We modified the Kawano code, CAMB, and CosmoMC to include the possible variation in the fine structure constant. We used observational primordial abundances of D, He, and Li, recent data from the cosmic microwave background, and the 2dFGRS power spectrum, to obtain bounds on the variation in . We calculated a piecewise solution to the scalar field equation of the Bekenstein model in two different regimes: i) matter and radiation, ii) matter and cosmological constant. We match both solutions with the appropriate boundary conditions. We performed a statistical analysis, using the bounds obtained from the early universe and other bounds from the late universe to constrain the free parameters of the model.Results.Results are consistent with no variation in for the early universe. Limits on are inconsistent with the scale length of the theory being larger than the Planck scale.Conclusions.In order to fit all observational and experimental data, the assumption > implied in Bekenstein's model has to be relaxed. © 2008 ESO.

Descripción: We have employed the Douglas-Kroll-Hess approximation to derive the perturbative Hamiltonians involved in the calculation of NMR spin-spin couplings in molecules containing heavy elements. We have applied this two-component quasirelativistic approach using finite perturbation theory in combination with a generalized Kohn-Sham code that includes the spin-orbit interaction self-consistently and works with Hartree-Fock and both pure and hybrid density functionals. We present numerical results for one-bond spin-spin couplings in the series of tetrahydrides C H4, Si H4, Ge H4, and Sn H4. Our two-component Hartree-Fock results are in good agreement with four-component Dirac-Hartree-Fock calculations, although a density-functional treatment better reproduces the available experimental data. © 2005 American Institute of Physics.

Descripción: Photoactive materials based on dye molecules incorporated into thin films or bulk solids are useful for applications as photosensitization, photocatalysis, solar cell sensitization and fluorescent labeling, among others. In most cases, high concentrations of dyes are desirable to maximize light absorption. Under these circumstances, the proximity of dye molecules leads to the formation of aggregates and statistical traps, which dissipate the excitation energy and lower the population of excited states. The search for enhancement of light collection, avoiding energy wasting requires accounting the photophysical parameters quantitatively, including the determination of quantum yields, complicated by the presence of light scattering when particulate materials are considered. In this work we summarize recent advances on the photophysics of dyes in light-scattering materials, with particular focus on the effect of dye concentration. We show how experimental reflectance, fluorescence and laser-induced optoacoustic spectroscopy data can be used together with theoretical models for the quantitative evaluation of inner filter effects, fluorescence and triplet formation quantum yields and energy transfer efficiencies. © 2013 The American Society of Photobiology.

Descripción: The confinement of Ar in planar slits of two identical parallel semi-infinite walls of alkali metals, alkaline-earth metal Mg, and CO 2 is investigated within the framework of the density functional theory. It is assumed that (1) the fluid atoms interact via a recently proposed effective attractive pair potential with strength, εff, which reproduces the experimental data of the surface tension of the liquid-vapor interface at the bulk coexistence curve, and (2) the adsorption on the walls is described by ab initio potentials characterized by a well depth, Wsf. In this way the systems were studied in the framework of a realistic approach. We found that for small coverages, the slit is always filled by forming two symmetric vapor films, one at each wall. For increasing coverage the behavior depends on the ratio Wsf/εff and the temperature T. In the case of alkali metals, we found at the triple point, Tt, of the adsorbate a regime of average density ρ*av in which the ground state exhibits asymmetric density profiles, leading to the so-called spontaneous symmetry breaking (SSB) effect. The SSB appears at an average density ρ*sb1 and disappears at a higher average density ρ*sb2 . When T is increased, the range of densities ρ*sb1≤ρ*av≤ ρ* sb2 diminishes and eventually the SSB disappears at a critical temperature, Tsb, which coincides with the critical prewetting temperature Tcpw observed in the adsorption on a single wall. For T>Tcpw the slit is filled symmetrically up to the phase transition to capillary condensation. All these features are examined as a function of the strength of the substrate and the width of the slit. Furthermore, no SSB effect was found for Mg and CO2. © 2010 American Institute of Physics.

Descripción: We investigate the importance of relativistic effects on NMR shielding constants and chemical shifts of linear HgL2 (L = Cl, Br, I, CH 3) compounds using three different relativistic methods: the fully relativistic four-component approach and the two-component approximations, linear response elimination of small component (LR-ESC) and zeroth-order regular approximation (ZORA). LR-ESC reproduces successfully the four-component results for the C shielding constant in Hg(CH3)2 within 6 ppm, but fails to reproduce the Hg shielding constants and chemical shifts. The latter is mainly due to an underestimation of the change in spin-orbit contribution. Even though ZORA underestimates the absolute Hg NMR shielding constants by ∼2100 ppm, the differences between Hg chemical shift values obtained using ZORA and the four-component approach without spin-density contribution to the exchange-correlation (XC) kernel are less than 60 ppm for all compounds using three different functionals, BP86, B3LYP, and PBE0. However, larger deviations (up to 366 ppm) occur for Hg chemical shifts in HgBr 2 and HgI2 when ZORA results are compared with four-component calculations with non-collinear spin-density contribution to the XC kernel. For the ZORA calculations it is necessary to use large basis sets (QZ4P) and the TZ2P basis set may give errors of ∼500 ppm for the Hg chemical shifts, despite deceivingly good agreement with experimental data. A Gaussian nucleus model for the Coulomb potential reduces the Hg shielding constants by ∼100-500 ppm and the Hg chemical shifts by 1-143 ppm compared to the point nucleus model depending on the atomic number Z of the coordinating atom and the level of theory. The effect on the shielding constants of the lighter nuclei (C, Cl, Br, I) is, however, negligible. © 2011 American Institute of Physics.

Descripción: The conventional random phase approximation (RPA) of the polarization propagator theory and a computational method based on continuous transformation of origin for the current density (CTOCD) induced within the electron cloud by an external homogeneous, static magnetic field has been employed to calculate atomic contributions to magnetic susceptibilities. The diamagnetic part of the magnetic susceptibility is written in terms of the polarization propagator. Since the paramagnetic term may also be obtained from the propagator it is thus possible to compute both contributions at the same level of approximation. The evaluated average susceptibility is independent of the origin of the vector potential, but depends on the origin of the reference frame. The atomic contributions to the diamagnetic and paramagnetic parts of the magnetic susceptibility are derived by applying off-diagonal hypervirial relations which are exactly fulfilled if the state functions are exact eigenfunctions of a model Hamiltonian. The rationalization of the magnetic susceptibilities into atomic contributions is applied to some small molecules: HF, H2O, NH3 and CH4, and the sum of these contributions is compared to the corresponding calculated total values and the experimental data for the molecular magnetic susceptibility for the same compounds. Computations are performed using basis sets of increasing quality. A series of sum rules for gauge independence of the computed results and charge-current conservation have been tested to document the accuracy of the calculation of magnetic properties. © 1999 American Institute of Physics.

Descripción: Local intracellular Ca2+ signals result from Ca2+ flux into the cytosol through individual channels or clusters of channels. To gain a mechanistic understanding of these events we need to know the magnitude and spatial distribution of the underlying Ca2+ flux. However, this is difficult to infer from fluorescence Ca2+ images because the distribution of Ca2+-bound dye is affected by poorly characterized processes including diffusion of Ca2+ ions, their binding to mobile and immobile buffers, and sequestration by Ca2+ pumps. Several methods have previously been proposed to derive Ca2+ flux from fluorescence images, but all require explicit knowledge or assumptions regarding these processes. We now present a novel algorithm that requires few assumptions and is largely model-independent. By testing the algorithm with both numerically generated image data and experimental images of sparklets resulting from Ca2+ flux through individual voltage-gated channels, we show that it satisfactorily reconstructs the magnitude and time course of the underlying Ca2+ currents. © 2005 by the Biophysical Society.